User profiles for H. Pagès

Henri Pagès

Scientific Advisor, Banque de France
Verified email at banque-france.fr
Cited by 1047

Orchestrating single-cell analysis with Bioconductor

…, D Risso, C Soneson, L Waldron, H Pagès… - Nature …, 2020 - nature.com
Recent technological advancements have enabled the profiling of a large number of genome-wide
features in individual cells. However, single-cell data present unique challenges that …

[HTML][HTML] Software for computing and annotating genomic ranges

M Lawrence, W Huber, H Pagès… - PLoS computational …, 2013 - journals.plos.org
We describe Bioconductor infrastructure for representing and computing on annotated genomic
ranges and integrating genomic data with the statistical computing features of R and its …

[HTML][HTML] ChIPpeakAnno: a Bioconductor package to annotate ChIP-seq and ChIP-chip data

LJ Zhu, C Gazin, ND Lawson, H Pagès, SM Lin… - BMC …, 2010 - Springer
Background Chromatin immunoprecipitation (ChIP) followed by high-throughput sequencing
(ChIP-seq) or ChIP followed by genome tiling array analysis (ChIP-chip) have become …

ShortRead: a bioconductor package for input, quality assessment and exploration of high-throughput sequence data

…, S Anders, M Lawrence, P Aboyoun, H Pagès… - …, 2009 - academic.oup.com
ShortRead is a package for input, quality assessment, manipulation and output of high-throughput
sequencing data. ShortRead is provided in the R and Bioconductor environments, …

Two contrasting classes of nucleolus-associated domains in mouse fibroblast heterochromatin

A Vertii, J Ou, J Yu, A Yan, H Pagès, H Liu… - Genome …, 2019 - genome.cshlp.org
… (H) Single optical sections of confocal microscopy images of a 3D immuno-FISH experiment.
… (H) Cells were either untreated or treated with 1% hexanediol for 2 h and stained with …

Wide band electrochromic displays based on thin conducting polymer films

H Pages, P Topart, D Lemordant - Electrochimica Acta, 2001 - Elsevier
New, wide band, flexible electrochromic displays have been realized with microporous
membranes metallized with gold that acts both as an electrode and a reflecting layer. A control of …

[HTML][HTML] GUIDEseq: a bioconductor package to analyze GUIDE-Seq datasets for CRISPR-Cas nucleases

LJ Zhu, M Lawrence, A Gupta, H Pagès, A Kucukural… - BMC genomics, 2017 - Springer
… within GUIDEseq are presented in the Use Cases within the main text, and are described
in full in the Installation and Usage Section [see Additional file 1] and in the manual pages

Relational drivers of the agroecological transition: An analysis of farmer trajectories in the Limagne plain, France

E Polge, H Pagès - Agricultural Systems, 2022 - Elsevier
CONTEXT The social network analysis of farmers who have adopted agroecological practices
give the possibility to identify which actors are involved in the agroecological transition …

A mathematical treatment of bank monitoring incentives

H Pages, D Possamaï - Finance and Stochastics, 2014 - Springer
… Since b j−1 θ=u−b j , the only value left for z is z=u−b j =b j−1 θ, from which we derive h 1
=u−b j−1 and h 2 =b j−1 . Thus, if a default occurs in that interval, either the bank’s continuation …

Genomic annotation resources in R/Bioconductor

MRJ Carlson, H Pagès, S Arora, V Obenchain… - … Genomics: Methods and …, 2016 - Springer
… But to do so is actually pretty straightforward and most such functions will be well documented
with their associated manual pages and vignettes [3, 4, 10, 12]. As usual, you can see the …